Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs1124324 chr16:67897487 C/T 7.99E-5 299 20.23 28.47 18.17 KM Plot
CESC rs112434994 chr16:67954398 G/C 2.88E-7 296 20.23 29.57 16.87 KM Plot
CESC rs11253277 chr10:650646 T/C 8.5E-6 293 21.2 27.2 7.57 KM Plot
CESC rs11253278 chr10:653011 T/C 8.92E-6 291 21.2 27.2 7.57 KM Plot
CESC rs112559298 chr19:9724444 C/T 4.25E-14 289 21.97 19.83 3.33 KM Plot
CESC rs112639895 chr10:649808 T/C 8.5E-6 293 21.2 27.2 7.57 KM Plot
CESC rs112641182 chr19:9734827 C/T 2.54E-14 292 21.97 20.23 3.33 KM Plot
CESC rs112684517 chr5:96117770 C/G 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs112716124 chr11:33071357 A/G 8.45E-7 293 21.73 22.98 1.7 KM Plot
CESC rs113052965 chr3:129136060 C/A 4.27E-5 293 21.47 21.27 11.95 KM Plot
CESC rs1131719 chr10:135085426 A/G 1.16E-7 294 3.33 20.23 21.73 KM Plot
CESC rs113201209 chr16:67736611 T/G 5.63E-6 285 21.07 26.27 16.87 KM Plot
CESC rs11327331 chr10:135075522 CG/C 1.73E-10 295 11.6 21.97 21.27 KM Plot
CESC rs11334124 chr7:43727950 TA/TAA 2.12E-5 298 21.23 25.13 5.93 KM Plot
CESC rs113474841 chr3:161005052 A/G 7.65E-5 296 28.58 20.43 19.05 KM Plot